Best Practices for Using MongoDB with FastAPI: ODM and Driver Selection

Kishan Arava
Kishan Arava
|
Published on 18 Jun 2025

When building FastAPI applications, developers accustomed to relational databases often rely on SQLAlchemy to simplify database interactions. However, MongoDB, being a NoSQL document-oriented database, requires a different approach—specifically, an Object-Document Mapper (ODM). Selecting the right ODM and properly integrating MongoDB into a FastAPI or Starlette application is essential for productivity, maintainability, and performance.

Choose Your ODM Wisely

The Python ecosystem offers several robust ODMs tailored for MongoDB:

  • Beanie: With a declarative syntax similar to SQLAlchemy, Beanie integrates seamlessly into FastAPI. It offers schema validation through Pydantic models, automatic migrations, built-in support for asynchronous operations, and strong typing. Beanie is ideal for teams who prefer a structured approach resembling traditional ORMs.

  • ODMantic: Similar in functionality but with a lighter footprint, ODMantic explicitly manages database connections through an Engine object. It provides flexible, minimal abstractions, making it well-suited for teams preferring less "magic" and more direct control over queries and performance.

  • MongoEngine: Although feature-rich and mature, MongoEngine is synchronous, making it less suitable for asynchronous FastAPI applications without additional complexity such as thread pools.

One Database Client to Rule Them All

Regardless of the ODM selected, always initialize exactly one MongoDB client. Using a single shared client instance (AsyncIOMotorClient or AsyncMongoClient from PyMongo’s newer async API) ensures efficient connection pooling and avoids resource exhaustion. During application startup or within a Starlette lifespan context manager, instantiate this client and pass it to your ODM.

Transition from Motor to PyMongo Async

MongoDB has officially deprecated Motor, its original async driver, with a planned End-of-Life by May 2027. Therefore, for future-proof applications, transition toward PyMongo’s native async support (available in PyMongo 4.13 onwards). Both Beanie and ODMantic support PyMongo Async, making this migration straightforward and highly recommended.

Leverage the Flexibility of Raw Queries

While ODMs streamline typical CRUD operations, sometimes you need direct access to MongoDB’s full capabilities. Both Beanie and ODMantic allow you to easily retrieve the underlying Motor or PyMongo collection object. This is invaluable for complex aggregation pipelines, bulk operations, or specialized features like Atlas Search or time-series collections.

Effective Integration with Starlette and FastAPI

Integrating your chosen ODM into Starlette or FastAPI involves:

  1. Defining your document models clearly.

  2. Managing database client initialization through lifespan or startup events.

  3. Using dependency injection to manage document model interactions within your routes.

This approach maximizes the ease of use and maintainability, closely matching the ergonomics of SQLAlchemy with relational databases.

Testing and Continuous Integration

Ensure robust testing by using MongoDB Memory Server or Dockerized MongoDB for isolated test environments. Seed data via ODM methods and use FastAPI’s TestClient for integration tests. This strategy ensures reliability and consistency across development and production environments.

By following these best practices—selecting the appropriate ODM, managing a single database client instance, preparing for upcoming driver migrations, and knowing when to utilize raw MongoDB capabilities—you can confidently build scalable, maintainable FastAPI applications leveraging MongoDB’s strengths.

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